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Computational Infrastructure & Workflow Engineering
AWS Environments
Secure VPC/IAM, right-sized EC2 (CPU/GPU), EBS layout, snapshots/backups, encryption, cost guards.
Images (AMIs)
Hardened OS, drivers, mounted EBS, CloudWatch and tagging.
Install Workflows
Containerized Nextflow pipelines for RNA-Seq, genome assembly/annotation, metagenomics, custom analysis.
Data Plumbing
S3 buckets, fast ingress/egress and reproducible data staging.
Typical Use Cases
Burst to cloud for a large pre-processing job
Then, freeze as an AMI for reproducibility/regulatory review.
Standardize how data is processed across sites
With the same versions, containers and parameters.
Deliverables
• A ready-to-run EC2 image (AMI) with your pipelines preinstalled and tested, plus infrastructure as code.
• Optional sandbox dataset to validate end-to-end runs.
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